The importance of detailed epigenomic profiling of different cell types within organs.

The human body consists of hundreds of kinds of cells specified from a single genome overlaid with cell type-specific epigenetic information. Comprehensively profiling the body's distinct epigenetic landscapes will allow researchers to verify cell types used in regenerative medicine and to determine the epigenetic effects of disease, environmental exposures and genetic variation. Key marks/factors that should be investigated include regions of nucleosome-free DNA accessible to regulatory factors, histone marks defining active enhancers and promoters, DNA methylation levels, regulatory RNAs, and factors controlling the three-dimensional conformation of the genome. Here we use the lung to illustrate the importance of investigating an organ's purified cell epigenomes, and outline the challenges and promise of realizing a comprehensive catalog of primary cell epigenomes

X-ray properties of UV-selected star forming galaxies at z~1 in the Hubble Deep Field North

We present an analysis of the X-ray emission from a large sample of ultraviolet (UV) selected, star forming galaxies with 0.74<z<1.32 in the Hubble Deep Field North (HDF-N) region. By excluding all sources with significant detected X-ray emission in the 2 Ms Chandra observation we are able to examine the properties of galaxies for which the emission in both UV and X-ray is expected to be predominantly due to star formation. Stacking the X-ray flux from 216 galaxies in the soft and hard bands produces significant detections. The derived mean 2-10 keV rest-frame luminosity is 2.97+/-0.26x10^(40) erg/s, corresponding to an X-ray derived star formation rate (SFR) of 6.0+/-0.6 Msolar/yr. Comparing the X-ray value with the mean UV derived SFR, uncorrected for attenuation, we find that the average UV attenuation correction factor is \~3. By binning the galaxy sample according to UV magnitude and colour, correlations between UV and X-ray emission are also examined. We find a strong positive correlation between X-ray emission and rest-frame UV emission. A correlation between the ratio of X-ray-to-UV emission and UV colour is also seen, such that L(X)/L(UV) increases for redder galaxies. Given that X-ray emission offers a view of star formation regions that is relatively unaffected by extinction, results such as these can be used to evaluate the effects of dust on the UV emission from high-z galaxies. For instance we derive a relationship for estimating UV attenuation corrections as a function of colour excess. The observed relation is inconsistent with the Calzetti et al. (2000) reddening law which over predicts the range in UV attenuation corrections by a factor of ~100 for the UV selected z~1 galaxies in this sample (abridged).Comment: 10 pages, 7 figures, accepted for publication in MNRA

Weighted-density approximation for general nonuniform fluid mixtures

In order to construct a general density-functional theory for nonuniform fluid mixtures, we propose an extension to multicomponent systems of the weighted-density approximation (WDA) of Curtin and Ashcroft [Phys. Rev. A 32, 2909 (1985)]. This extension corrects a deficiency in a similar extension proposed earlier by Denton and Ashcroft [Phys. Rev. A 42, 7312 (1990)], in that that functional cannot be applied to the multi-component nonuniform fluid systems with spatially varying composition, such as solid-fluid interfaces. As a test of the accuracy of our new functional, we apply it to the calculation of the freezing phase diagram of a binary hard-sphere fluid, and compare the results to simulation and the Denton-Ashcroft extension.Comment: 4 pages, 4 figures, to appear in Phys. Rev. E as Brief Repor

PG 1700+518 Revisited: Adaptive Optics Imaging and a Revised Starburst Age for the Companion

We present the results of adaptive-optics imaging of the z=0.2923 QSO PG 1700+518 in the J and H bands. The extension to the north of the QSO is clearly seen to be a discrete companion with a well-defined tidal tail, rather than a feature associated with the host galaxy of PG 1700+518 itself. On the other hand, an extension to the southwest of the QSO (seen best in deeper, but lower-resolution, optical images) does likely comprise tidal material from the host galaxy. The SED derived from images in J, H, and two non-standard optical bands indicates the presence of dust intermixed with the stellar component. We use our previously reported Keck spectrum of the companion, the SED found from the imaging data, and updated spectral-synthesis models to constrain the stellar populations in the companion and to redetermine the age of the starburst. While our best-fit age of 0.085 Gyr is nearly the same as our earlier determination, the fit of the new models is considerably better. This age is found to be remarkably robust with respect to different assumptions about the nature of the older stellar component and the effects of dust.Comment: 11 pages; includes two eps figures. Latex (AASTEX). Two additional figures in gif format. Postscript version including all figs. (424 kb) can be obtained from http://www.ifa.hawaii.edu/~canaguby/preprints.html To appear in ApJ. Letter

Negations in syllogistic reasoning: Evidence for a heuristic–analytic conflict

An experiment utilizing response time measures was conducted to test dominant processing strategies in syllogistic reasoning with the expanded quantifier set proposed by Roberts (2005). Through adding negations to existing quantifiers it is possible to change problem surface features without altering logical validity. Biases based on surface features such as atmosphere, matching, and the probability heuristics model (PHM; Chater & Oaksford, 1999; Wetherick & Gilhooly, 1995) would not be expected to show variance in response latencies, but participant responses should be highly sensitive to changes in the surface features of the quantifiers. In contrast, according to analytic accounts such as mental models theory and mental logic (e.g., Johnson-Laird & Byrne, 1991; Rips, 1994) participants should exhibit increased response times for negated premises, but not be overly impacted upon by the surface features of the conclusion. Data indicated that the dominant response strategy was based on a matching heuristic, but also provided evidence of a resource-demanding analytic procedure for dealing with double negatives. The authors propose that dual-process theories offer a stronger account of these data whereby participants employ competing heuristic and analytic strategies and fall back on a heuristic response when analytic processing fails

SYSTEMS-2: a randomised phase II study of radiotherapy dose escalation for pain control in malignant pleural mesothelioma

SYSTEMS-2 is a randomised study of radiotherapy dose escalation for pain control in 112 patients with malignant pleural mesothelioma (MPM). Standard palliative (20Gy/5#) or dose escalated treatment (36Gy/6#) will be delivered using advanced radiotherapy techniques and pain responses will be compared at week 5. Data will guide optimal palliative radiotherapy in MPM

Inheritance of Black Hair Patterns in Cattle Lacking the Extension Factor for Black (E.). III, A Multiple Allelic Hypothesis to Explain the Inheritance of Blackish and Blackish Pattern

Author Institution: Department of Dairy Science and the Institute of Genetics, The Ohio State University, Columbus and Department of Dairy Science, The Ohio Agricultural Experiment Station, Wooste

Discovery of a 66 mas Ultracool Binary with Laser Guide Star Adaptive Optics

We present the discovery of 2MASS J21321145+1341584AB as a closely separated (0.066") very low-mass field dwarf binary resolved in the near-infrared by the Keck II Telescope using laser guide star adaptive optics. Physical association is deduced from the angular proximity of the components and constraints on their common proper motion. We have obtained a near-infrared spectrum of the binary and find that it is best described by an L5+/-0.5 primary and an L7.5+/-0.5 secondary. Model-dependent masses predict that the two components straddle the hydrogen burning limit threshold with the primary likely stellar and the secondary likely substellar. The properties of this sytem - close projected separation (1.8+/-0.3 AU) and near unity mass ratio - are consistent with previous results for very low-mass field binaries. The relatively short estimated orbital period of this system (~7-12 yr) makes it a good target for dynamical mass measurements. Interestingly, the system's angular separation is the tightest yet for any very low-mass binary published from a ground-based telescope and is the tightest binary discovered with laser guide star adaptive optics to date.Comment: 10 pages, 3 figures; accepted for publication to A

Fitting ACE Structural Equation Models to Case-Control Family Data

Investigators interested in whether a disease aggregates in families often collect case-control family data, which consist of disease status and covariate information for families selected via case or control probands. Here, we focus on the use of case-control family data to investigate the relative contributions to the disease of additive genetic effects (A), shared family environment (C), and unique environment (E). To this end, we describe a ACE model for binary family data and then introduce an approach to fitting the model to case-control family data. The structural equation model, which has been described previously, combines a general-family extension of the classic ACE twin model with a (possibly covariate-specific) liability-threshold model for binary outcomes. Our likelihood-based approach to fitting involves conditioning on the proband’s disease status, as well as setting prevalence equal to a pre-specified value that can be estimated from the data themselves if necessary. Simulation experiments suggest that our approach to fitting yields approximately unbiased estimates of the A, C, and E variance components, provided that certain commonly-made assumptions hold. These assumptions include: the usual assumptions for the classic ACE and liability-threshold models; assumptions about shared family environment for relative pairs; and assumptions about the case-control family sampling, including single ascertainment. When our approach is used to fit the ACE model to Austrian case-control family data on depression, the resulting estimate of heritability is very similar to those from previous analyses of twin data